The output function of the volcanoplot module

A volcano plot displays -log(10) of a p value/ FDR against a log(2) fold change on the x axis. This module produces such a plot using the scatterplot module (which uses plot_ly)), using data provided by the contrasts module based on the setting of contrasts in eselist.

Usage

volcanoplotOutput(id)

Arguments

id

Module namespace

Value

output An HTML tag object that can be rendered as HTML using as.character()

Details

Leverages the scatterplot module

Examples

differentialtableOutput("experiment")
#> Error in differentialtableOutput("experiment"): could not find function "differentialtableOutput"

# However, almost certainly called via application creation:

data(airway, package = "airway")
ese <- as(airway, "ExploratorySummarizedExperiment")
eselist <- ExploratorySummarizedExperimentList(ese)
#> Creating ExploratorySummarizedExperimentList object

if (interactive()) {
  app <- prepare_app("volcanoplot", eselist)
  shiny::shinyApp(ui = app$ui, server = app$server)
}