The output function of the upset module

This module illustrates the intersection of differential sets using a reimplementation of the upset tool of Lex, Gehlenborg et al. The reimplementation was done to allow use of more dynamic components, and to allow plotting of all elements in given intersections (rather than assigning every item to its highest-order intersection). It also seems to have sped things up.

Usage

upsetOutput(id, eselist)

Arguments

id

Submodule namespace

eselist

ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects

Value

output An HTML tag object that can be rendered as HTML using as.character()

Details

This function provides the form elements to control the display

This provides actual plot element for display by applications

References

Lex and Gehlenborg (2014). Points of view: Sets and intersections. <em>Nature Methods</em> 11, 779 (2014). http://www.nature.com/nmeth/journal/v11/n8/abs/nmeth.3033.html

Gehlenborg N (2016). <em>UpSetR: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets</em>. R package version 1.3.0, https://CRAN.R-project.org/package=UpSetR

Examples

upsetOutput("myid", eselist)
#> Error in upsetOutput("myid", eselist): could not find function "upsetOutput"