Skip to contents

This module produces an MA plot of log(10) expression vs log(2) fold change for contrasts defined in the `contrasts` slot of an 'ExploratorySummarizedExperimentList` object.

Usage

maplotInput(id, eselist)

Arguments

id

Submodule namespace

eselist

ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects

Value

output An HTML tag object that can be rendered as HTML using as.character()

Details

Leverages the contrasts and scatterplot modules

Examples

data(airway, package = "airway")
ese <- as(airway, "ExploratorySummarizedExperiment")
eselist <- ExploratorySummarizedExperimentList(ese)
#> Creating ExploratorySummarizedExperimentList object

maplotInput("myid", eselist)
#> Error in maplotInput("myid", eselist): could not find function "maplotInput"

# Almost certainly used via application creation

if (interactive()) {
  app <- prepare_app("maplot", eselist)
  shiny::shinyApp(ui = app$ui, server = app$server)
}