The output function of the genesetbarcodeplot module

This module leverages gene sets stored in the gene_sets slot of an ExploratorySummarizedExperimentList object to produce interactive barcode plots, reproducing the statistics behind Limma's barcodeplot function. Genes are ranked by fold changes calculated with the contrasts module, and FDR values from the gene_set_analyses slot of the selected ExploratorySummarizedExperiment are displayed where provided.

Usage

genesetbarcodeplotOutput(id)

Arguments

id

Module namespace

Value

output An HTML tag object that can be rendered as HTML using as.character()

Examples

genesetbarcodeplotOutput("experiment")
#> Error in genesetbarcodeplotOutput("experiment"): could not find function "genesetbarcodeplotOutput"

# Almost certainly used via application creation

if (interactive()) {
  data(airway, package = "airway")
  ese <- as(airway, "ExploratorySummarizedExperiment")
  eselist <- ExploratorySummarizedExperimentList(ese)
  app <- prepare_app("genesetbarcodeplot", eselist)
  shiny::shinyApp(ui = app$ui, server = app$server)
}