Shared UI input scaffolding for the differential-scatter plot modules

volcanoplot, maplot and foldchangeplot are all scatter plots of statistics derived from a contrast in the contrasts slot of an ExploratorySummarizedExperimentList, and share the same input scaffolding (expression matrix selection, contrast selection, scatter plot controls, gene highlighting, table export). Only the numeric transform and threshold-line logic genuinely differ between them - see differentialscatterLogic.

Usage

differentialscatterInput(
  id,
  eselist,
  scatter_id,
  require_contrast_stats = FALSE,
  multi_view_fn = function(esel) !single_valid_matrix(esel)
)

Arguments

id

Submodule namespace

eselist

ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects

scatter_id

Sub-namespace used for the scatterplot, gene highlighting and table export controls (e.g. "volcano", "ma", "foldchange")

require_contrast_stats

Restrict eselist to experiments with a populated contrast_stats slot before building controls

multi_view_fn

Function of the (possibly filtered) eselist returning TRUE if the expression-matrix controls should be shown as their own fieldset rather than pushed in as hidden fields

Value

A list of input tags