The input function of the clustering module

This module plots the expression profiles (scaled for comparison) of the selected rows of the input matrix provided by the selectmatrix module.

Usage

clusteringInput(id, eselist)

Arguments

id

Submodule namespace

eselist

ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects

Value

output An HTML tag object that can be rendered as HTML using as.character()

Details

The clara method, a fast approximation of partitioning about medoids, is used to produce the clusters. As well as defining the input matrix users can decide how the clusters are drawn and how many clusters should be generated.

This funcion provides the form elements to control the display

Examples

library(shinyngs)
data(airway, package = "airway")
ese <- as(airway, "ExploratorySummarizedExperiment")
eselist <- ExploratorySummarizedExperimentList(ese)
#> Creating ExploratorySummarizedExperimentList object
clusteringInput("myid", eselist)
#> Error in clusteringInput("myid", eselist): could not find function "clusteringInput"