Skip to contents

The server function of the clustering module

Source: R/clustering.R
clustering.Rd

This module plots the expression profiles (scaled for comparison) of the selected rows of the input matrix provided by the selectmatrix module.

Usage

clustering(id, eselist)

Arguments

id

Module namespace

eselist

ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects

Details

The clara method, a fast approximation of partitioning about medoids, is used to produce the clusters. As well as defining the input matrix users can decide how the clusters are drawn and how many clusters should be generated.

This function is called directly, using the same id as its UI counterpart, and wraps its logic in moduleServer() (see example).

Examples

clustering("myid", eselist)
#> Error in clustering("myid", eselist): could not find function "clustering"