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Calculate a clustering dendrogram based on correlation

Source: R/dendro.R
calculate_dendrogram.Rd

Calculate a clustering dendrogram based on correlation

Usage

calculate_dendrogram(
  plotmatrix,
  cor_method = "spearman",
  cluster_method = "ward.D2"
)

Arguments

plotmatrix

Expression/ other data matrix

cor_method

'spearman' or 'perason'

cluster_method

Clustering method to pass to hclust (Default: 'ward.D2')

Value

output Object of class 'dist'

Examples

data(airway, package = "airway")
mymatrix <- assays(airway)[[1]]
calculate_dendrogram(mymatrix)
#> 'dendrogram' with 2 branches and 8 members total, at height 0.09646692